rs31058114 SNP Detail

Summary

• ID
  rs31058114
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGAGTC ACTGTCCCCC
  AGCCCATGAC CACACTCATG GGGACAGAGA CAGGCCTAGT GCTCTAGAAA TCAGCCTGCA
  CTCAGGTCTG ACAGCTTCTG AGTCTGCCTC TGCATTCAAC TCAAGACACA GGAAAATGAG
  ACCAGTCATC CACGTGCCTT TCCTTCTGAG GCCAGGTACT CCGAGGCTGC ATGCTCAAGT
  M
  AGTCAGAGAT TAGCCTGTCT GGAGAAGTGA TCGAGTCCAT GGAAAGGAAG TCTGGTAAAG
  GAATCCCACA GAAAAAACAA TATTTTTTGA AAAACTGATA TAATAAAAAC AAAACCAACC
  AACCAACCAA CCAACGAACC AAAGAAGACA CTGGAGTGGA AGGCCATCCA ATGCGCATGG
  ATCAATACAG TTGTTATTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47011848	NES10861867	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31058114					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011848	NES10861867	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201289 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	1406 bp upstream
Rr398083	regulatory region 398083	1777 bp downstream
Rr398084	regulatory region 398084	972 bp upstream
Rr586444	regulatory region 586444	1280 bp distal
Rr586445	regulatory region 586445	1886 bp distal
Rr586446	regulatory region 586446	882 bp proximal
Rr586447	regulatory region 586447	1383 bp proximal
Tssr32047	transcription start site region 32047	1244 bp upstream
Tssr32048	transcription start site region 32048	1263 bp upstream
Tssr32049	transcription start site region 32049	1287 bp upstream
Tssr32050	transcription start site region 32050	1345 bp upstream
Tssr32051	transcription start site region 32051	1396 bp upstream