rs31058121 SNP Detail

Summary

• ID
  rs31058121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAAGTC TGGTAAAGGA
  ATCCCACAGA AAAAACAATA TTTTTTGAAA AACTGATATA ATAAAAACAA AACCAACCAA
  CCAACCAACC AACGAACCAA AGAAGACACT GGAGTGGAAG GCCATCCAAT GCGCATGGAT
  CAATACAGTT GTTATTGTGA TAACGGTTAG GTTATTTTAC CCAAAGTCAC CAGTATAGGC
  R
  GTACCCACCA TAAAGTCAAA TGCTATTTCT GTCAAGCTTA CAGGCAAGTG CAGTCTAAAG
  CGAGTATGCT TCCTTTTAGG AGAGTTAGAC TCCAGAGAGC GTCAGAACAA AGTCCGCAAA
  TATCCATGTA CAACATTCAG CTTCTATATA ACTGATCTTT ATTGGCTACA TATGACCAGA
  CATTTCCTGA GTTTCCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47011856	NES10861873	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31058121					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011856	NES10861873	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201532 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	1163 bp upstream
Rr398084	regulatory region 398084	729 bp upstream
Rr586444	regulatory region 586444	1523 bp distal
Rr586446	regulatory region 586446	639 bp proximal
Rr586447	regulatory region 586447	1140 bp proximal
Tssr32047	transcription start site region 32047	1001 bp upstream
Tssr32048	transcription start site region 32048	1020 bp upstream
Tssr32049	transcription start site region 32049	1044 bp upstream
Tssr32050	transcription start site region 32050	1102 bp upstream
Tssr32051	transcription start site region 32051	1153 bp upstream