rs31058484 SNP Detail

Summary

• ID
  rs31058484
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATTTCAGT TCCTTTTATC
  TCAATTTGTG TTTGGGCGGC TGTTACTTTG CCACTTCTAA CAGTGGCTGC TCCAAGGAGC
  CTGGAGCAGT AGGAAGCTCA GGGAAAGAAC TAAGTTGGCT GAGGACTGTC CCTGTTACAG
  AGCCAGTGCC TGGGTGAGTA ACCACATGTG TTTCTCTCAA CAGACGCTGC CGGCGAAATT
  K
  CCAGGACATC TCCATTCTGG GGTGGCAGAC TCACCCTGGT GGGCAAGCCA GTGCAAGCTG
  CAGACCTCAC AGGGTCTTGT GGCCATTTGC AGAGCGCCAC CTGGCGGGCC AAGCGTGCAT
  GTACTGCTTT TCTTGGGTCT TCATTCAATA ACCCCTCTGG CTTGGGAGAC AATGACCAAG
  GCCCATCCTT GGTGGTGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47012434	NES10859335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		T	G	T	T		G
ss321002899	CHEV_3_142223702	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31058484					SNP	G	G	G	G	G	G	T	G	G	G	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012434	NES10859335	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp3	guanylate binding protein 3			Coding-NonSynonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr398085	regulatory region 398085			127 bp downstream
Rr586453	regulatory region 586453			317 bp distal
Rr586454	regulatory region 586454			within coordinates
Rr586455	regulatory region 586455			91 bp proximal
Tssr32157	transcription start site region 32157			633 bp downstream
Tssr32158	transcription start site region 32158			604 bp downstream
Tssr32159	transcription start site region 32159			572 bp downstream
Tssr32160	transcription start site region 32160			524 bp downstream
Tssr32161	transcription start site region 32161			384 bp downstream
Tssr32162	transcription start site region 32162			169 bp downstream
Tssr32163	transcription start site region 32163			136 bp downstream
Tssr32164	transcription start site region 32164			122 bp downstream
Tssr32165	transcription start site region 32165			110 bp downstream
Tssr32166	transcription start site region 32166			219 bp upstream
Tssr32167	transcription start site region 32167			946 bp upstream