rs31058489 SNP Detail

Summary

• ID
  rs31058489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TTTCTTGGGT CTTCATTCAA
  Y
  AACCCCTCTG GCTTGGGAGA CAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47012440	NES10859339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	C	C
ss321002901	CHEV_3_142223851	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31058489					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012440	NES10859339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266648 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	276 bp downstream
Rr586453	regulatory region 586453	466 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	37 bp distal
Tssr32157	transcription start site region 32157	782 bp downstream
Tssr32158	transcription start site region 32158	753 bp downstream
Tssr32159	transcription start site region 32159	721 bp downstream
Tssr32160	transcription start site region 32160	673 bp downstream
Tssr32161	transcription start site region 32161	533 bp downstream
Tssr32162	transcription start site region 32162	318 bp downstream
Tssr32163	transcription start site region 32163	285 bp downstream
Tssr32164	transcription start site region 32164	271 bp downstream
Tssr32165	transcription start site region 32165	259 bp downstream
Tssr32166	transcription start site region 32166	70 bp upstream
Tssr32167	transcription start site region 32167	797 bp upstream