rs31058490 SNP Detail

Summary

• ID
  rs31058490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA CCCCTCTGGC TTGGGAGACA
  R
  TGACCAAGGC CCATCCTTGG TGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47012442	NES10859340	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	G		A
ss321002902	CHEV_3_142223874	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31058490					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012442	NES10859340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp3	guanylate binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr398085	regulatory region 398085			299 bp downstream
Rr586453	regulatory region 586453			489 bp distal
Rr586454	regulatory region 586454			within coordinates
Rr586455	regulatory region 586455			60 bp distal
Tssr32157	transcription start site region 32157			805 bp downstream
Tssr32158	transcription start site region 32158			776 bp downstream
Tssr32159	transcription start site region 32159			744 bp downstream
Tssr32160	transcription start site region 32160			696 bp downstream
Tssr32161	transcription start site region 32161			556 bp downstream
Tssr32162	transcription start site region 32162			341 bp downstream
Tssr32163	transcription start site region 32163			308 bp downstream
Tssr32164	transcription start site region 32164			294 bp downstream
Tssr32165	transcription start site region 32165			282 bp downstream
Tssr32166	transcription start site region 32166			47 bp upstream
Tssr32167	transcription start site region 32167			774 bp upstream