rs31058998 SNP Detail

Summary

• ID
  rs31058998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127400131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCCCTT CCAACCTCCC
  TATTCAACTC CTTGCTTTCT CTGCCTGTCC TTTAGTAATC TAGTCTTTTT TTTTTTTTTT
  TTTTTTCCCC CCACCCGCCT CAATCCCTCC CATTCTGCAT CCAATTCTAG TGACTCAGCA
  GTTAGGGTCA GAGGGCAGGG AGCCTTAGTG CTACAGGCAC AGAAAACTGC AACCCACCCC
  Y
  GCTACTCAGC CTCTCCACCC ACACTGCTCC CACCTAATGA TCCCTTCTAT GAAGAACACA
  TGGTTGGAGC AGGTGCTACC AGGCAATTCT AGTGAGCTAA ATTCTCTTCC CACAGCTGGG
  CATGGCAGAC TCTGCACAGG TGCCAACACT GGTATACCTG GTCACAGGTG GCTGCGGCTT
  CCTGGGGGAA CATATTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45993511	mCV25139141	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145882804	ENSMUSSNP1309538	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31058998					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127400131 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	within coordinates
Cpgi19768	CpG island 19768	1678 bp distal
Cpgi19769	CpG island 19769	1456 bp proximal
Gm49388	predicted gene, 49388	within coordinates
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	within coordinates
Rr655897	regulatory region 655897	33 bp distal
Rr655898	regulatory region 655898	434 bp distal
Rr655899	regulatory region 655899	1285 bp proximal
Setd1a	SET domain containing 1A	837 bp downstream
Tssr69292	transcription start site region 69292	344 bp downstream
Tssr69293	transcription start site region 69293	263 bp downstream
Tssr69294	transcription start site region 69294	240 bp downstream
Tssr69295	transcription start site region 69295	110 bp downstream