rs31059003 SNP Detail

Summary

• ID
  rs31059003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44150694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAACAGG CTGCCTCCAG GGCTTCCTCT AGGCCTCTCT
  GCCTTTGGTG CCTTGATATG CAAGGGTTTT CCAATTGGCT TCCCTTTTTT CCCTCCGCTG
  R
  AGGTGACATC CAGAGCCTCC ACCTTCTAAG GAAGACCCCA CCCTCAGCCA CACCCCATCC
  CCTCACTATG GTCTAGACAG GGGCTCTACC ACTGAGTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45993516	mCV25287541	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				G	A
ss51891392	NES14911137	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	G		A	G	G	A	A
ss149113603	ENSMUSSNP5564753	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31059003					SNP	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891392	NES14911137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44150694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	820 bp distal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	419 bp upstream
Mybpc2	myosin binding protein C, fast-type	429 bp downstream
Rr646111	regulatory region 646111	303 bp proximal
Rr646112	regulatory region 646112	430 bp proximal
Rr646113	regulatory region 646113	638 bp proximal