rs31059268 SNP Detail

Summary

• ID
  rs31059268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCCAAT GCGCATGGAT
  CAATACAGTT GTTATTGTGA TAACGGTTAG GTTATTTTAC CCAAAGTCAC CAGTATAGGC
  GGTACCCACC ATAAAGTCAA ATGCTATTTC TGTCAAGCTT ACAGGCAAGT GCAGTCTAAA
  GCGAGTATGC TTCCTTTTAG GAGAGTTAGA CTCCAGAGAG CGTCAGAACA AAGTCCGCAA
  R
  TATCCATGTA CAACATTCAG CTTCTATATA ACTGATCTTT ATTGGCTACA TATGACCAGA
  CATTTCCTGA GTTTCCTTGT CCCAGTAGTG ACAGCGTCAT CTCCAGGACT TGTTAACATA
  TTATTTTGGC TTGAATTCTA GACAAGTGAG ATAGAAGATC TTTCTTGAAG CTCCGTTAAG
  GGAAGGCTAT TTCTTCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47011864	NES10861884	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31059268					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011864	NES10861884	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201652 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	1043 bp upstream
Rr398084	regulatory region 398084	609 bp upstream
Rr586444	regulatory region 586444	1643 bp distal
Rr586446	regulatory region 586446	519 bp proximal
Rr586447	regulatory region 586447	1020 bp proximal
Tssr32047	transcription start site region 32047	881 bp upstream
Tssr32048	transcription start site region 32048	900 bp upstream
Tssr32049	transcription start site region 32049	924 bp upstream
Tssr32050	transcription start site region 32050	982 bp upstream
Tssr32051	transcription start site region 32051	1033 bp upstream