rs31059563 SNP Detail

Summary

• ID
  rs31059563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125323129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCAAGGGA CAGAACTCAG GACCTGAGAT
  TATCTAGAGT GGGTGTGATG GAACAGCAGA TGAAGATGAC CACACTTGTC AGTACACACA
  GCATAGCACC AGTATTTGCC CTACCACACC Ggagttgaga ggctccaaat acaatgatgc
  R
  tgtttaaaga aactgaaatg ctattacctt gctttgatct tacaacttgc atacatgtat
  caaattatca cactgtactc cataaatcat gtataattaA ATACTAAACA TATAAATCAA
  ATACATATAA GGAGACATGC ATGGGGCAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44992331	mCV24333280	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145400712	ENSMUSSNP2493270	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss319953758	CHEV_1_127291969	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31059563					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125323129 () rs orientation: forward

Symbol	Name	Function Class
Actr3	ARP3 actin-related protein 3	within coordinates
Tssr13374	transcription start site region 13374	1615 bp upstream
Tssr13375	transcription start site region 13375	1188 bp downstream