rs31059656 SNP Detail

Summary

• ID
  rs31059656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5709731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC CGGACCCAGC GCCTCATCCA
  R
  CCCAAAGAAG TTCTGGTGTT CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss44992076	mCV24137872	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss50578100	NES13650494	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A	A	A	A		G	A	G		A
ss146013217	ENSMUSSNP6115025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A					A
ss325717225	CHEV_19_5659703	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31059656					SNP	G	A	A	A	G	A	A	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578100	NES13650494	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5709731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	1032 bp proximal
Rr543103	regulatory region 543103	1922 bp proximal
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157621	transcription start site region 157621	1452 bp upstream
Tssr157622	transcription start site region 157622	1922 bp downstream