rs31060189 SNP Detail

Summary

• ID
  rs31060189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142202560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATCAC CCTCGTTCAA
  AGGAATAAAA TAAACAGCGC TTGAAACAAT GACAAACGAT GTCAACGTTC TCTTTCAGAT
  TGTGGGCAAC TTCTGGGAAA TTAGTTCAGT GACATTCAAG CCTTCTGCTT TTGAAAATCC
  CCTTCAACTA TACAGTCTGA ACTTGTGTAG TTTCAATTTC AGTTTAGAGA ACCCTTTTGC
  M
  GATTCCTGTT CTTGCGTTTC ATAATCAAGT TCTCTCCCAG CTCTCTGGGA GAGGAAAGGA
  AATTCCCAGG GCTGGCCGTT ATTTCTCAGA ACCAAGCACA GATAAATAAG GGTGCAACGA
  GTTTGTCCTC TTGCAGAGTC CCGTTTGAAG CAGTGTTCTT ACTGGCCCCT GCTCCCGCTC
  TTCAGTTTTT CTTAAGGTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47011878	NES10861910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31060189					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011878	NES10861910	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142202560 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	135 bp upstream
Rr398084	regulatory region 398084	within coordinates
Rr586446	regulatory region 586446	within coordinates
Rr586447	regulatory region 586447	112 bp proximal
Tssr32047	transcription start site region 32047	10 bp downstream
Tssr32048	transcription start site region 32048	within coordinates
Tssr32049	transcription start site region 32049	16 bp upstream
Tssr32050	transcription start site region 32050	74 bp upstream
Tssr32051	transcription start site region 32051	125 bp upstream