rs31060249 SNP Detail

Summary

• ID
  rs31060249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84090155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGAGCAG TTCACTTAAC TGCAAAACTC TCAACCAACC
  GACAGAAAAC AAAGAGAAGC GAATGATAGC CAACCTCAGC ACACAGGCCT TGCGGATCCT
  Y
  ACTCAATTGA TTTCTAATAG TTACAAGTGT CCACGCTGTG AGGGCTGTAC CTTCTCCTTG
  AAGTAAACAA TATTTAAGTG ATGTCCAGCA TCGGTGCGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46474332	mCV22789610	ABI	CRAMUS_MOUSE	f	SNP	T	T		C		T
ss49774073	NES12390873	PERLEGEN	MM_PANEL2	f	SNP			C		T		C	C		C	C	C	C		C
ss134233977	ENSMUSSNP4166188	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss325902974	CHEV_X_82291888	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31060249					SNP	T	T	C	C	T	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49774073	NES12390873	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84090155 () rs orientation: forward

Symbol	Name	Function Class
Dmd	dystrophin, muscular dystrophy	within coordinates
Rr692261	regulatory region 692261	1391 bp proximal
Rr692262	regulatory region 692262	1875 bp proximal
Tssr161429	transcription start site region 161429	1735 bp upstream
Tssr161430	transcription start site region 161430	1760 bp upstream