rs31061289 SNP Detail

Summary

• ID
  rs31061289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142203245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTTTAGA ACAGAATCAC
  CTCCAGAATA GCAGGCAACC ATACTGTTTG CATGAACAAT ATAGCAGAGC ATGAGCTGCG
  CAGTAAAAGG TCTGAGACTG GGGCTCTAAC CAGCGCTCCC ATTGTCGGGA AGTGAATTCC
  CAGACAGCAA GGCTCTATAT GTGGGCCGAT GCTTGTCCTC ATTGGAGCTT GGGACAAATT
  Y
  ACAGCCAGAG CTGCGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAACTC CAAGGCACAC AGGAAGAGGT TTGCTGACAG CAGTGAGCAT
  TTTCGCTGCA CTGCCATCTC TTAAAGGTTC CGTGTTTGCT TTTCCTGGGC AGTCACTCAC
  TTTTAAACCC CATTTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47011890	NES10861917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31061289					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011890	NES10861917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142203245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp5	guanylate binding protein 5			Intron
				Noncoding-Transcript-Variant
Rr398084	regulatory region 398084			683 bp downstream
Rr586446	regulatory region 586446			574 bp distal
Rr586447	regulatory region 586447			within coordinates
Rr586448	regulatory region 586448			1511 bp proximal
Tssr32047	transcription start site region 32047			695 bp downstream
Tssr32048	transcription start site region 32048			680 bp downstream
Tssr32049	transcription start site region 32049			654 bp downstream
Tssr32050	transcription start site region 32050			592 bp downstream
Tssr32051	transcription start site region 32051			545 bp downstream