rs31062170 SNP Detail

Summary

• ID
  rs31062170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142264782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTAGCCT TTCTGACTGG
  TGGCCAGCTT CTACTTCTCT ACTCTTTCCT TCTCTATGCC TTTCTCTGCC TCTGCTACTC
  TCTTAACTCC CCTCCCCATG TCCTTGTGTA ATCAGTTGAA TGGAGCAATT TGTATATGAC
  CCTTCTGTTT CTCACTGTGG GATGTAAGGA TGGAATAGCT GGACTAGTGA GAATATGAAT
  K
  CCATGGGTAA CTCTGTACCT TTCACTCACT TGTCGGTCCA GTAGGGAGAT ATAGTTTTTT
  CTTATGATCA AGGAAGGAAT AAAGCACAAA TTGATACTCA TATGTATTAT ATAAGGACTT
  CAACCTAACC AGCCTTAAAG GATAGTTAAT GATAACTTGT AGCAGTTAAT AATAAAAGCA
  TATCTGTTGT AGCTCACCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47012390	NES10859440	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31062170					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012390	NES10859440	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142264782 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	1005 bp upstream
Rr398085	regulatory region 398085	1289 bp upstream
Rr586453	regulatory region 586453	563 bp proximal
Rr586454	regulatory region 586454	1401 bp proximal
Rr586455	regulatory region 586455	1808 bp proximal
Tssr32157	transcription start site region 32157	1043 bp upstream
Tssr32158	transcription start site region 32158	1087 bp upstream
Tssr32159	transcription start site region 32159	1133 bp upstream
Tssr32160	transcription start site region 32160	1172 bp upstream
Tssr32161	transcription start site region 32161	1330 bp upstream
Tssr32162	transcription start site region 32162	1517 bp upstream
Tssr32163	transcription start site region 32163	1551 bp upstream
Tssr32164	transcription start site region 32164	1584 bp upstream
Tssr32165	transcription start site region 32165	1600 bp upstream
Tssr32166	transcription start site region 32166	1936 bp upstream