rs31062173 SNP Detail

Summary

• ID
  rs31062173
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142264893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA TTGATACTCA TATGTATTAT
  M
  TAAGGACTTC AACCTAACCA GCCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
ss47012394	NES10859442	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		C
ss321002877	CHEV_3_142222096	CHEVERUD	SCREENING_POP	f	SNP								C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
rs31062173					SNP	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012394	NES10859442	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142264893 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	894 bp upstream
Rr398085	regulatory region 398085	1178 bp upstream
Rr586453	regulatory region 586453	452 bp proximal
Rr586454	regulatory region 586454	1290 bp proximal
Rr586455	regulatory region 586455	1697 bp proximal
Tssr32157	transcription start site region 32157	932 bp upstream
Tssr32158	transcription start site region 32158	976 bp upstream
Tssr32159	transcription start site region 32159	1022 bp upstream
Tssr32160	transcription start site region 32160	1061 bp upstream
Tssr32161	transcription start site region 32161	1219 bp upstream
Tssr32162	transcription start site region 32162	1406 bp upstream
Tssr32163	transcription start site region 32163	1440 bp upstream
Tssr32164	transcription start site region 32164	1473 bp upstream
Tssr32165	transcription start site region 32165	1489 bp upstream
Tssr32166	transcription start site region 32166	1825 bp upstream