rs31062614 SNP Detail

Summary

• ID
  rs31062614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142203534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG GCCGGTATGG TCTGGCTATG
  Y
  GGATCGCTCC TGGGAACTCT TTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45529105	mCV23580482	ABI	CRAMUS_MOUSE	f	SNP							C		T
ss47011898	NES10861711	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	T	C	C	C	C	C	C
ss136014834	ENSMUSSNP3722402	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31062614					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47011898	NES10861711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142203534 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	within coordinates
Rr398084	regulatory region 398084	972 bp downstream
Rr586446	regulatory region 586446	863 bp distal
Rr586447	regulatory region 586447	16 bp distal
Rr586448	regulatory region 586448	1222 bp proximal
Tssr32047	transcription start site region 32047	984 bp downstream
Tssr32048	transcription start site region 32048	969 bp downstream
Tssr32049	transcription start site region 32049	943 bp downstream
Tssr32050	transcription start site region 32050	881 bp downstream
Tssr32051	transcription start site region 32051	834 bp downstream