rs31062729 SNP Detail

Summary

• ID
  rs31062729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCCATGTAA GGAGCTACAG AGACCATCTA GAGGCTGCCA TACCCGGAGA TCCATCCCAT
  AGTCAGGTTC CAAACGCTGA CACCATTGCA TACACTAGCA AGATTTTGCT GAAAGGACCC
  TGATATAGCT GTCTCTTGTG AGACTATGCT GGGGCCTAGC AAACACAGAA GTGGATGTTC
  ACAGTCAGCT ATTGGATGGA TCACAGGGCC CCCAATGGAG GAGCTAGAGA AAGTACCAAG
  GAGCTAAAGG GATCTGCAAC CCTATAGGTG GAACAACAAT ATGAACTAAC CAGTACCCCC
  Y
  GGAGCTCGTG TCTCTAACTG CATATGTATC AGAAGATGGC CTGGTCGGCC ATCAGTGGAA
  AGAAAGGCCC ATTGGTCTTG CAGATTTTAT ATGCCTCAGT ACAGGGGAAC GCCAGGGCCA
  AGAGGTGGGA GGGGGTGGGT GGGGGAGTAG GTGTGGGAGG GTGTGGGGGA CTTTTGGGAT
  AGCATTGGAA ATGTAAATGA AATAAATACC CAATAATACT AATACTAATA CTACTACTAA
  TAATAATAAT AATAATAATA ATAATAATAA TAATAAAAGA AACAGAAGCA TAGTCCAAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46474456	mCV22572070	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss134474232	ENSMUSSNP3448510	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31062729					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805217 () rs orientation: forward

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1631 bp upstream