rs31063103 SNP Detail

Summary

• ID
  rs31063103
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CACTTCCATG GCCAGTTCAC
  W
  TAGACAATAT TTTAAATAAT TCATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45514970	mCV23580124	ABI	CRAMUS_MOUSE	f	SNP		A					T
ss47012404	NES10859319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	T	A	A
ss136014979	ENSMUSSNP1672488	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31063103					SNP	A	A	A	A	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012404	NES10859319	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265244 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	543 bp upstream
Rr398085	regulatory region 398085	827 bp upstream
Rr586453	regulatory region 586453	101 bp proximal
Rr586454	regulatory region 586454	939 bp proximal
Rr586455	regulatory region 586455	1346 bp proximal
Tssr32157	transcription start site region 32157	581 bp upstream
Tssr32158	transcription start site region 32158	625 bp upstream
Tssr32159	transcription start site region 32159	671 bp upstream
Tssr32160	transcription start site region 32160	710 bp upstream
Tssr32161	transcription start site region 32161	868 bp upstream
Tssr32162	transcription start site region 32162	1055 bp upstream
Tssr32163	transcription start site region 32163	1089 bp upstream
Tssr32164	transcription start site region 32164	1122 bp upstream
Tssr32165	transcription start site region 32165	1138 bp upstream
Tssr32166	transcription start site region 32166	1474 bp upstream