rs31063527 SNP Detail

Summary

• ID
  rs31063527
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:145014404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCATG CCTTCCCAAA
  GGAATCAGTA TCAATCATTT CAGTGGACAG AAAGAAATTA CCTATGGTAG TTTAAATAAA
  AATGCCCCCA CATAGTGCCC TTGGGAGTGG CACTAGTAGG AGGTGTGGCC TTGTTTGAGT
  AGGTATAAGA TCACATGTCT TCAAGCCATT CAGGAGAGAG TATGCCTGTA ATACCAGTAT
  S
  TTTTTGGTTG GAGCAGAAAG TCAGCCTGTG CCACATGGTG AGATCCTCTT TTGAAAACAG
  GAAGAAAAGA AGTATAATTC TTAAACAAGT GTCTTTCTTT GTATACTCTT TAACAGAAGA
  CAATTTTCCC TTATTTTATG CATTTATGCA TTATTCTTAC ATTTGTATTA TTATATACAT
  TTATCAGGGA AGAGAGCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49698943	NES12976070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31063527					SNP	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49698943	NES12976070	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:145014404 () rs orientation: forward

Symbol	Name	Function Class
Rr420032	regulatory region 420032	183 bp proximal