rs31063855 SNP Detail

Summary

• ID
  rs31063855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGTAGTC TATACATGAA
  GTACATGAAG TAGTCTGAGC ACAGCCAACT TAGCATACAT GAACCCCGTC CCACATATTG
  TATATATATT TTGAGACAAA ATTTTCATGT AGCCCAGGCT AGCCTCAAGC TTAATATATA
  GCTCAGAATG GTTCCCCTGC CTCCACTTCC ATGGCCAGTT CACATAGACA ATATTTTAAA
  Y
  AATTCATGAA AGCAGGAAAC TTTTATAGAA CAGATTTTTT TTACTTGTGA TTTTATGTCA
  GAACTCAAAA AAAAATCAGT ATTGGGAGGA TTTGGAAGTT TGGATTTGTA GATTAGGAAT
  GAACACTTGT GTTGGACAAA TGGCAAACAA AGAAAGAGAG TAGTTTGAGA CATCCCCAGA
  AAGACAGGCA AAGCATACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47012406	NES10859321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31063855					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012406	NES10859321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265261 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	526 bp upstream
Rr398085	regulatory region 398085	810 bp upstream
Rr586453	regulatory region 586453	84 bp proximal
Rr586454	regulatory region 586454	922 bp proximal
Rr586455	regulatory region 586455	1329 bp proximal
Tssr32157	transcription start site region 32157	564 bp upstream
Tssr32158	transcription start site region 32158	608 bp upstream
Tssr32159	transcription start site region 32159	654 bp upstream
Tssr32160	transcription start site region 32160	693 bp upstream
Tssr32161	transcription start site region 32161	851 bp upstream
Tssr32162	transcription start site region 32162	1038 bp upstream
Tssr32163	transcription start site region 32163	1072 bp upstream
Tssr32164	transcription start site region 32164	1105 bp upstream
Tssr32165	transcription start site region 32165	1121 bp upstream
Tssr32166	transcription start site region 32166	1457 bp upstream