rs31063858 SNP Detail

Summary

• ID
  rs31063858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC AAACAAAGAA AGAGAGTAGT
  Y
  TGAGACATCC CCAGAAAGAC AGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47012410	NES10859323	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	C	C		T
ss321002884	CHEV_3_142222629	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31063858					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012410	NES10859323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265426 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	361 bp upstream
Rr398085	regulatory region 398085	645 bp upstream
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	757 bp proximal
Rr586455	regulatory region 586455	1164 bp proximal
Tssr32157	transcription start site region 32157	399 bp upstream
Tssr32158	transcription start site region 32158	443 bp upstream
Tssr32159	transcription start site region 32159	489 bp upstream
Tssr32160	transcription start site region 32160	528 bp upstream
Tssr32161	transcription start site region 32161	686 bp upstream
Tssr32162	transcription start site region 32162	873 bp upstream
Tssr32163	transcription start site region 32163	907 bp upstream
Tssr32164	transcription start site region 32164	940 bp upstream
Tssr32165	transcription start site region 32165	956 bp upstream
Tssr32166	transcription start site region 32166	1292 bp upstream