rs31063862 SNP Detail

Summary

• ID
  rs31063862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCAGAG TTGTTAGCTC
  TACTGACAGA CCTGACTGAA TCATGCATTG TTCTTGCCAA GCAAGCTGCA CTGTAAACAG
  TGGCCATCTC TATAGTTCAC CATCTTTATA ACACTTTGGT TAAAGACTCT AACAGGGAGC
  TGACAGCAGA TATGCACTTT AAGGAAACTG GGGACTTGTT TTCCTTTAAC AAAAAGGCTA
  R
  GATACCCAGG GCTTGAGCAA TCATCTTTGA CTCCCTAAAC AAAGCTGGTT CATGTCAGGA
  CACAGTTTCA GTTTCTATTT CCCAGATCCC TGGAAAACAC AAGAAAGGGA GGAGAAAGGG
  CTTTTCTGCT GGGGGGAAGT CCAGTCGTCG CCTTTGGCTC GAATTCACAG CCTGAGTTCA
  GGTTGTATAA TGACTGCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47012414	NES10859325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	A	A		G
ss321002886	CHEV_3_142222897	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31063862					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012414	NES10859325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265694 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	93 bp upstream
Rr398085	regulatory region 398085	377 bp upstream
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	489 bp proximal
Rr586455	regulatory region 586455	896 bp proximal
Tssr32157	transcription start site region 32157	131 bp upstream
Tssr32158	transcription start site region 32158	175 bp upstream
Tssr32159	transcription start site region 32159	221 bp upstream
Tssr32160	transcription start site region 32160	260 bp upstream
Tssr32161	transcription start site region 32161	418 bp upstream
Tssr32162	transcription start site region 32162	605 bp upstream
Tssr32163	transcription start site region 32163	639 bp upstream
Tssr32164	transcription start site region 32164	672 bp upstream
Tssr32165	transcription start site region 32165	688 bp upstream
Tssr32166	transcription start site region 32166	1024 bp upstream
Tssr32167	transcription start site region 32167	1751 bp upstream