rs31063923 SNP Detail

Summary

• ID
  rs31063923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52224504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA AACCCCATAC CCCCCACCCA
  Y
  CCACCGAGAA TTCTTAAGCA TCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39249917	mCV24786717	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss139498650	ENSMUSSNP878275	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss324626450	CHEV_14_52606722	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31063923					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52224504 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef40	Rho guanine nucleotide exchange factor 40			Intron
				mRNA-UTR
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi6430	CpG island 6430			1548 bp distal
Cpgi6431	CpG island 6431			941 bp distal
Cpgi6432	CpG island 6432			1964 bp proximal
Gm16617	predicted gene, 16617			within coordinates
Rr491848	regulatory region 491848			541 bp distal
Rr491849	regulatory region 491849			1770 bp proximal
Tssr125442	transcription start site region 125442			1990 bp upstream
Tssr128466	transcription start site region 128466			1785 bp downstream