rs31064194 SNP Detail

Summary

• ID
  rs31064194
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123061681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAAGGGT GAGGAAGCGA ATTCCTCCCA GGACCAGGGA
  AGAGGGCTGG GCGGCTTCCA GTCCCCTGCT GTGAGCATCG CTGTCCCGCT CCCCTTCCGC
  W
  GCTGCTGCGT GGGTGCGCCG GTGCGGTCTT CTGAAGGCTC TGGGCTGCAC GGGGCCAAGC
  GACTGCCACG TCTCTCTAGG CGCAGTGGGA GGAGGGAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45495230	mCV25366976	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss135761734	ENSMUSSNP5061578	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T		T
ss320918509	CHEV_3_122970950	CHEVERUD	SCREENING_POP	f	SNP					A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31064194					SNP	A	T	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123061681 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56815	predicted gene, 56815			678 bp downstream
Gm66521	predicted gene, 66521			615 bp upstream
Rr584484	regulatory region 584484			724 bp distal
Rr584485	regulatory region 584485			772 bp distal
Rr584486	regulatory region 584486			532 bp distal
Rr584487	regulatory region 584487			within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component			Intron
				mRNA-UTR
Tssr31542	transcription start site region 31542			830 bp downstream
Tssr31543	transcription start site region 31543			811 bp downstream
Tssr31544	transcription start site region 31544			532 bp downstream
Tssr31545	transcription start site region 31545			1660 bp upstream