rs31064467 SNP Detail

Summary

• ID
  rs31064467
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:145013792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCATCTC TTTGACCATA
  TTCAAACATT ATAGACTTTT CCACATTTTA TAAGAGATGA CTATGGGTTC TGTCTGAATA
  TTTAAGTCAT TATCACAGAA TTGTTTTATT GTTATTAACA ATATCATTAT ACTAAAAACA
  TTAAATAAAT CAAAAGTACA TTTTCCATAT TTGCAGAGAG TCATTTTGCA GTTGGCATGA
  W
  CACATGTAGA GTTTAAGTAA ATAATTTTTA ATTAACTATC ATAGCTTGTT AGTTTATTCA
  TCTGGGGTGA GTTTAGGTTC AGGATTTGGC TCTGGTATAA ACTGGCTTCA ACACATTACA
  CTGTTTATTC TTCTATACGA TTTGTATGTT AGAAAATGGG ACTAAAAGTT TGTTTTCAAA
  TGTTTTGATT TGAATTTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49698953	NES12976165	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31064467					SNP	A	A	A	A	T	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49698953	NES12976165	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:145013792 () rs orientation: forward

Symbol	Name	Function Class
Rr420032	regulatory region 420032	795 bp proximal