rs31064616 SNP Detail

Summary

• ID
  rs31064616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GTCCAGTCGT CGCCTTTGGC
  W
  CGAATTCACA GCCTGAGTTC AGGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47012418	NES10859327	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	A	A		T	A	T	T		A
ss136014982	ENSMUSSNP2132753	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss321002890	CHEV_3_142223056	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31064616					SNP	A	A	A	A	A	A	A	T	A	A	A	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012418	NES10859327	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265853 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	218 bp upstream
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	330 bp proximal
Rr586455	regulatory region 586455	737 bp proximal
Tssr32157	transcription start site region 32157	within coordinates
Tssr32158	transcription start site region 32158	16 bp upstream
Tssr32159	transcription start site region 32159	62 bp upstream
Tssr32160	transcription start site region 32160	101 bp upstream
Tssr32161	transcription start site region 32161	259 bp upstream
Tssr32162	transcription start site region 32162	446 bp upstream
Tssr32163	transcription start site region 32163	480 bp upstream
Tssr32164	transcription start site region 32164	513 bp upstream
Tssr32165	transcription start site region 32165	529 bp upstream
Tssr32166	transcription start site region 32166	865 bp upstream
Tssr32167	transcription start site region 32167	1592 bp upstream