rs31064620 SNP Detail

Summary

• ID
  rs31064620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA AGAGGGCAGG GGACCCAGAA
  M
  ACGCAATGAC AATCATTGAT TAGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss47012422	NES10859329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A		C
ss321002893	CHEV_3_142223212	CHEVERUD	SCREENING_POP	f	SNP								C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs31064620					SNP	A	A	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47012422	NES10859329	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266009 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	62 bp upstream
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	174 bp proximal
Rr586455	regulatory region 586455	581 bp proximal
Tssr32157	transcription start site region 32157	143 bp downstream
Tssr32158	transcription start site region 32158	114 bp downstream
Tssr32159	transcription start site region 32159	82 bp downstream
Tssr32160	transcription start site region 32160	34 bp downstream
Tssr32161	transcription start site region 32161	103 bp upstream
Tssr32162	transcription start site region 32162	290 bp upstream
Tssr32163	transcription start site region 32163	324 bp upstream
Tssr32164	transcription start site region 32164	357 bp upstream
Tssr32165	transcription start site region 32165	373 bp upstream
Tssr32166	transcription start site region 32166	709 bp upstream
Tssr32167	transcription start site region 32167	1436 bp upstream