rs31065127 SNP Detail

Summary

• ID
  rs31065127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:145013303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTAGACT GTTTTTTATT
  CAATTATTAA CTTTATAGTA ATTTGTACTG AATTGTAGAA TTAATTTCTG TTTTAAAGAT
  TGATTTCAAT GTTTAATCCT AACCATTTGT ACTTCTAAGT GTATTGTAGA AGTTGTTTGC
  TTGTTAAATG TTGAGTTGCC ACTGAACTTT AAGGTGGAGA TACTGAGTAA TCCCTGACTA
  W
  AAGATTTGCA TTTGTAGAAG TGCCTATTGA TTTCTAAGAA TTGTAAGACA AAGGCTGGAA
  AATGATCATA GGCCAAAATG AGAAAGGGGC ATCCTAAAGG TCAATACTTT GTAAACTATG
  TAGCTGGCTG GCACTTAGAT ACATGTTATT ATGGTATAAA ATGACTAGTA TGGGTGGGAC
  GAGAGTGCCA GTGTGAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49698963	NES12976139	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31065127					SNP	T	T	T	T	A	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49698963	NES12976139	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:145013303 () rs orientation: forward

Symbol	Name	Function Class
Rr420032	regulatory region 420032	1284 bp proximal