rs31066723 SNP Detail

Summary

• ID
  rs31066723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142453291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGATGCT GATAATAATA
  GTGTGGAGAA AATTCCCAGT TCCCCTCAGC CTTTCCCTTA CTTACAACTA GGAACACACC
  CCATCCCAGC TACCTTGTTC CCATAACATG ACATACCACA CACGGTGTTA AGTTGTTATT
  GCCTGCCTGG CTGATCTCAG CTCGTCTGAT CCTTGGCTAT CAGTATTTTG ATCTATACCA
  Y
  GTTCTCTTCA TTATTTTCTA AATAAATTCA TTTATTCTGT ATTAGTTCAT CTCAAACCCA
  TCTCCAGCCT AGGCCTGTCT GTGGAATTTC CTTCGTGTCT GAGTCCACCA CCTCCTAATT
  CTCATTTCTG TGACTGTTTC ACGGTCTGGG GTGCTTTGAG TAGGTCTGGG CCCCCATAGA
  TTCGTATGTT TGAATGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
ss47014035	NES10851418	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
rs31066723					SNP	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47014035	NES10851418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142453291 () rs orientation: forward

Symbol	Name	Function Class
Gm15540	predicted gene 15540	within coordinates
Rr586479	regulatory region 586479	206 bp proximal
Rr586480	regulatory region 586480	689 bp proximal