rs31067504 SNP Detail

Summary

• ID
  rs31067504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66211039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATAAAAA CTCTCATAGA
  AAAAACCAAC GCAGAGCGCA AGTCCTTGCT CAACAGTTTA GAGGAAGCCA AGAAGAAGAA
  AGAGGTAGGG CCAAGCCTTG GCTGAGCCCA GGCTCTCCCT GCTGGAGGGG AGGAGGGGAC
  ATGGTGAGCA GGTGCCTTTC TGGGTTGCCA TGGTGTCCTA AGGCGGTCCT CGAAGGGTTC
  Y
  GCTAATGCTG GACTGAGGAG CCAGGGAAAG CACATTCGCT TGTGGGAGCC TCAGTGCCGA
  GGCCTTGAAT TTGGTTTCCC TGCAACTCTG GTCCAGGGCC TGAAGCCTAG ATTCATTTCA
  ATAGGTTTTT CTAACCCTTG CTGTGGGTAG GGCATGGTGC AGGACTCAGC GGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49200010	NES12498070	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31067504					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49200010	NES12498070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66211039 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126260	transcription start site region 126260	1799 bp downstream
Tssr126261	transcription start site region 126261	1782 bp downstream
Tssr126262	transcription start site region 126262	1755 bp downstream
Tssr126263	transcription start site region 126263	263 bp downstream
Tssr126264	transcription start site region 126264	222 bp downstream
Tssr126265	transcription start site region 126265	194 bp downstream
Tssr126266	transcription start site region 126266	155 bp downstream
Tssr126267	transcription start site region 126267	663 bp upstream
Tssr126268	transcription start site region 126268	1247 bp upstream
Tssr126269	transcription start site region 126269	1333 bp upstream
Tssr126270	transcription start site region 126270	1992 bp upstream
Tssr129260	transcription start site region 129260	231 bp upstream
Tssr129261	transcription start site region 129261	192 bp upstream
Tssr129262	transcription start site region 129262	179 bp upstream
Tssr129263	transcription start site region 129263	163 bp upstream
Tssr129264	transcription start site region 129264	110 bp upstream
Tssr129265	transcription start site region 129265	1271 bp downstream
Tssr129266	transcription start site region 129266	1306 bp downstream
Tssr129267	transcription start site region 129267	1338 bp downstream
Tssr129268	transcription start site region 129268	1400 bp downstream