rs31069080 SNP Detail

Summary

• ID
  rs31069080
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21881759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTA CTATGGTGCC CGCCTCTTGC
  S
  GACTCTGGGG CCTTAGGGCG GGCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39250658	mCV23043796	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C	G
ss139200685	ENSMUSSNP4830767	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
ss324566729	CHEV_14_22650913	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31069080					SNP	G	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21881759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	within coordinates
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	161 bp downstream
Tssr124455	transcription start site region 124455	117 bp downstream
Tssr124456	transcription start site region 124456	151 bp upstream
Tssr124457	transcription start site region 124457	1191 bp upstream
Tssr127690	transcription start site region 127690	562 bp upstream
Vdac2	voltage-dependent anion channel 2	within coordinates