rs31070069 SNP Detail

Summary

• ID
  rs31070069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142407807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTGGCAC ACGGGAAGCT
  TGCTCAGGGC TGCAGCCAGC CAGCCTGTAA ATCTGTTCAA CTTTTGCCTG TGTGCGGTAC
  CCTAATTTCG GCATCAGGTG ACCATACCGC TTCCCTTGTG AGAGAATCTC ACTTTCACGC
  GGCCTTAAAG CCCGTTTTGA ATGGTGCCTC TTAACTCTTA TGCTGATAAT GCCTCTTAAC
  W
  CTTATGCTGA TAAACTTGAC TGTGTTTTTT ATTCATGCTT CACCTCTTCA TATGGCCTTG
  AATGCCTCTG TACTTTGAAA GCTAGAACCC TGTTCACCTC GCTCTGTTGC AATTAGCGAA
  CTTTATAAAC ACTCTAGAAC CCGGCTAACA GGTATGGCAT GTGGTGAAAA TAAAGGGAGC
  AGTGTTATTT ATCAAGAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47013503	NES10854127	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs31070069					SNP	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013503	NES10854127	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142407807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13889	CpG island 13889	591 bp distal
Gm15540	predicted gene 15540	within coordinates
Kyat3	kynurenine aminotransferase 3	Intron
Rr398089	regulatory region 398089	947 bp downstream
Rr586467	regulatory region 586467	956 bp distal
Rr586468	regulatory region 586468	within coordinates
Rr586469	regulatory region 586469	910 bp distal
Rr586470	regulatory region 586470	187 bp distal
Tssr32246	transcription start site region 32246	1003 bp downstream
Tssr32247	transcription start site region 32247	981 bp downstream
Tssr32248	transcription start site region 32248	941 bp downstream