rs31070558 SNP Detail

Summary

• ID
  rs31070558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9727408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAAAGGAA AGTTCATGGG GAAAGTCTAA GAGAAAAGAG
  GTCGAAAGCA AGGTAGAAGA AAGAAGGGAA GAAAATAACA AAATAGAGAA ATGGGGTGGG
  Y
  GGTGGGGCAA CAATGTGATA ATAAGAAATG TGGTACAAAC TGTTAACGGC AGTCCTGGCC
  GAGGCTATGT CTACAAGAGC CCTGACAATG AACTGCAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46475968	mCV24735800	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss134087564	ENSMUSSNP5928514	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31070558					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9727408 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	930 bp upstream
Tssr160530	transcription start site region 160530	961 bp upstream