rs31070925 SNP Detail

Summary

• ID
  rs31070925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142408013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATAAAC TTGACTGTGT
  TTTTTATTCA TGCTTCACCT CTTCATATGG CCTTGAATGC CTCTGTACTT TGAAAGCTAG
  AACCCTGTTC ACCTCGCTCT GTTGCAATTA GCGAACTTTA TAAACACTCT AGAACCCGGC
  TAACAGGTAT GGCATGTGGT GAAAATAAAG GGAGCAGTGT TATTTATCAA GAGGCTGTCT
  Y
  TGATAAATCT TTCTTGAGCT TTTAGGTAAC CTGAAGGTTC CTGACGTTTT CAGATTGCTA
  ACACAACTAT TCTTTATGTC TGTATACCTC CTATGGGTCA GATTTGTAAC TTGGTAGTTT
  GAGTGGTAAA TTCAGAGCAC TAAACTTTAA CCATGTTTAA ACTGAGTTGT GAATGCTTTG
  CCTACCTTTG AGATTTGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47013509	NES10854134	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31070925					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013509	NES10854134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142408013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13889	CpG island 13889	797 bp distal
Gm15540	predicted gene 15540	within coordinates
Kyat3	kynurenine aminotransferase 3	Intron
Rr375835	regulatory region 375835	1881 bp upstream
Rr398089	regulatory region 398089	1153 bp downstream
Rr586467	regulatory region 586467	1162 bp distal
Rr586468	regulatory region 586468	177 bp distal
Rr586469	regulatory region 586469	1116 bp distal
Rr586470	regulatory region 586470	393 bp distal
Tssr32246	transcription start site region 32246	1209 bp downstream
Tssr32247	transcription start site region 32247	1187 bp downstream
Tssr32248	transcription start site region 32248	1147 bp downstream