rs31071827 SNP Detail

Summary

• ID
  rs31071827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:14441275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATTCTC AATCCTATTT
  CATGCATTGT GTTATTTAAC TGACTATAAT ATGCTCCAAA CTCTACTGAT CCAGAAGACA
  GTCTGCTTTT GACGACTACT AGATGCCAGT ATCTACTAGG AGGCACTATT CTACTACTAG
  TATGGAGTAT TATTGGTATC TAGTAAGAGT TAGAATGACA ACAAACAGCA ACCAAATAAC
  R
  ATCGGCCGGG GAGACTACAG TAAAAAGTGG CTCCAACATG CACACAGCAT GTATACACAC
  ATACTCCTAC AAGTGCACGT GTCCATACGG CGAAAAAGGG GGAAAGTAGG CTATAAGAGA
  GTGGGGAGAG AAGCGGATAA GAATAAGGAG AATTGAGGAA GAGGTTTGGG GCTACGTGTG
  GGTAGAGCAC TCGGCGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49199867	NES12679688	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31071827					SNP	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49199867	NES12679688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:14441275 () rs orientation: forward

Symbol	Name	Function Class
Gm29992	predicted gene, 29992	804 bp downstream
Gm50095	predicted gene, 50095	169 bp upstream
Rr534283	regulatory region 534283	1960 bp distal