rs31071829 SNP Detail

Summary

• ID
  rs31071829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:14440967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGATCA CAGTCAGCCT
  GCATGGCCTC ACCTGTGTAA GACAGGACCA CAGTCAGCCT GCAGGGCCTG ACCTGTGCCT
  TCCATTTGAT GGATTGCTGT AGAACCCAAC AAAAGTCGCT GAGTTAGGCT AAGTCCAGTG
  TCTGTAAAAG CCACTGGGGC AGCTGGACAT GGAGCTGAGT AGGTGCTTAA CAGAGAAGAG
  Y
  ATGAAAGCTA AGGTCCTCTC CGCCTCATCT TGAATTTTCC TCGTTAGTTT CAGAGTTAAC
  ATTGACTATA GAAGTTCATC AATATCCTCG ATGTGTTCAA GGCTGAGTCA TATTCTCAAT
  CCTATTTCAT GCATTGTGTT ATTTAACTGA CTATAATATG CTCCAAACTC TACTGATCCA
  GAAGACAGTC TGCTTTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49199869	NES12679687	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31071829					SNP	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49199869	NES12679687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:14440967 () rs orientation: forward

Symbol	Name	Function Class
Gm29992	predicted gene, 29992	1112 bp downstream
Gm50095	predicted gene, 50095	477 bp upstream
Rr534283	regulatory region 534283	1652 bp distal