rs31072689 SNP Detail

Summary

• ID
  rs31072689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:12503151 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CAAAAGGGCT CCTAACACTA GAAAAAGTTC AAGGCCAAAC ATACCTTGTA AAGCTATTTC
  CCACTTTACT TCTGATAGAC TGTCTTGAAT TTCGTTAGAA AGTTCAAGAC CAGGCGTACC
  TTGTAAAGCT ATTCCCCACT TTACTTCTGA TAGACTGTCT TGAATTTCGT TAGAAAGTTC
  AAGACCAGAC TTACCTTGTA AAGCTATACT TACGGGTACC CTGTTCCCCA GCTGAAGAGT
  TCTGAATTCA CGCAGTTGAA TCCTTCTCAA CAGTCTGTTT TGTGGGAACA CTTCATGACC
  R
  TGACCCGCAG TTCTGGTTCC GGAATGAGGG ATCTTCCTTG CGCCGGTGAT GGTTAACTCC
  CGTCCCGAGT TTTCTTGTCC CGGGTTTTTT CTTCCCGGAT TTTCTCGTCC CGGATTTCGG
  CACCAACTCT TACACGCGTT CACGCGACCG GCCAGGAAAG ACGCAGCAAA CCAGAATCTT
  CTGTGGCAAA ACTTTATTGC TTACATCTTC AGGAGCAAGA GTGCAAGAGA GCAAGCGCTC
  TATTGCTTAC ATCTTTAGGA GCCAGAGCGC AAGAGCGCAA GAGCTTTATT GCTTACATCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39251259	mCV23674787	ABI	CRAMUS_MOUSE	f	SNP		G	G	A
ss134499024	ENSMUSSNP5276216	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss148232920	ENSMUSSNP1660085	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss148847224	ENSMUSSNP4478667	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31072689					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12503151 () rs orientation: reverse

Symbol	Name	Function Class
Map3k4	mitogen-activated protein kinase kinase kinase 4	within coordinates
Rr392297	regulatory region 392297	27 bp downstream