rs31074182 SNP Detail

Summary

• ID
  rs31074182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66214080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATTTTT TTTTTCCATT
  AGTGCCTTGG GTCTTAATAC CATGTCCTAC ATGGTATGGT TTGCATTAGA AATAGAAGAA
  GTCTTGGCAT CCAACACACA TCTACTGTAG CTCCATTGTC TAAAGATGGT TTATGTTGTC
  AGGACACACT TGTGCTCTCT GGGGCTTGAA GGCCAGTTAG GGAGTACCAT CAGTCAAGGA
  R
  AACAAAGAAC AGCCATGATG TCAGAAGGCA CACAGCTGAG GGGATGTGGC AGGAGAGATC
  TCCTCAGATG GAGATGGTGG GAAGGCAGGC AGGACCTGCT GAGAGCCGTG GGAATATCCT
  CAGCCACAGG GAAGTCCCAT GGCTGCAAGC AAACAAATAA GCTGCATCGT GCCCTGACCA
  TGGCACTGAG CAGAGGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49200004	NES12498023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31074182					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49200004	NES12498023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66214080 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Rr494180	regulatory region 494180	1285 bp proximal
Tssr126268	transcription start site region 126268	1715 bp downstream
Tssr126269	transcription start site region 126269	1653 bp downstream
Tssr126270	transcription start site region 126270	1038 bp downstream
Tssr126271	transcription start site region 126271	1011 bp downstream
Tssr126272	transcription start site region 126272	995 bp downstream
Tssr126273	transcription start site region 126273	972 bp downstream
Tssr126274	transcription start site region 126274	928 bp downstream
Tssr126275	transcription start site region 126275	915 bp downstream
Tssr126276	transcription start site region 126276	833 bp downstream
Tssr126277	transcription start site region 126277	807 bp downstream
Tssr126278	transcription start site region 126278	768 bp downstream
Tssr126279	transcription start site region 126279	269 bp upstream
Tssr126280	transcription start site region 126280	299 bp upstream
Tssr129265	transcription start site region 129265	1737 bp upstream
Tssr129266	transcription start site region 129266	1704 bp upstream
Tssr129267	transcription start site region 129267	1688 bp upstream
Tssr129268	transcription start site region 129268	1622 bp upstream
Tssr129269	transcription start site region 129269	921 bp upstream
Tssr129270	transcription start site region 129270	874 bp upstream
Tssr129271	transcription start site region 129271	837 bp upstream
Tssr129272	transcription start site region 129272	304 bp downstream