rs31074824 SNP Detail

Summary

• ID
  rs31074824
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:66212690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGGAT GGGGAATGTG
  GAGAATCCAT GAAATAGGCC TCATTCCATA TGCTGGGTAC AGTTGATTAG CATTGCTTGA
  CTGCACATCG TTCTAGTGTC ATGGTCGATT GGTGATGTCT GCTTGGCAGG TACCATCTCT
  TTCAAGACCT TTAACTGGTT GGGTAAAATG GCCTTATGGG ATGGTAGAAT CCTGTGTTAG
  W
  ATAGGAAAAG GGAATTAAAA AATATTTAGT CTATTTGCAT TAATTCTATC CCTACCTGTG
  AGATTCACTT GGTTGGAACT CAGTAAAATT CACTGTTTCC TCAAGGCTGA GCAGCTAAGC
  AGGAGTGGCT ATTTATTCTT TATGGCCCAA GGTGAGACTT GGGAACCTCC GAGTTTCGCC
  ATGAGAAATG GATTTGGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49200006	NES12498022	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31074824					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49200006	NES12498022	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66212690 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	Intron
Tssr126263	transcription start site region 126263	1914 bp downstream
Tssr126264	transcription start site region 126264	1873 bp downstream
Tssr126265	transcription start site region 126265	1845 bp downstream
Tssr126266	transcription start site region 126266	1806 bp downstream
Tssr126267	transcription start site region 126267	979 bp downstream
Tssr126268	transcription start site region 126268	325 bp downstream
Tssr126269	transcription start site region 126269	263 bp downstream
Tssr126270	transcription start site region 126270	341 bp upstream
Tssr126271	transcription start site region 126271	359 bp upstream
Tssr126272	transcription start site region 126272	384 bp upstream
Tssr126273	transcription start site region 126273	411 bp upstream
Tssr126274	transcription start site region 126274	455 bp upstream
Tssr126275	transcription start site region 126275	464 bp upstream
Tssr126276	transcription start site region 126276	497 bp upstream
Tssr126277	transcription start site region 126277	562 bp upstream
Tssr126278	transcription start site region 126278	598 bp upstream
Tssr126279	transcription start site region 126279	1659 bp upstream
Tssr126280	transcription start site region 126280	1689 bp upstream
Tssr129260	transcription start site region 129260	1882 bp upstream
Tssr129261	transcription start site region 129261	1843 bp upstream
Tssr129262	transcription start site region 129262	1830 bp upstream
Tssr129263	transcription start site region 129263	1814 bp upstream
Tssr129264	transcription start site region 129264	1761 bp upstream
Tssr129265	transcription start site region 129265	347 bp upstream
Tssr129266	transcription start site region 129266	314 bp upstream
Tssr129267	transcription start site region 129267	298 bp upstream
Tssr129268	transcription start site region 129268	232 bp upstream
Tssr129269	transcription start site region 129269	457 bp downstream
Tssr129270	transcription start site region 129270	478 bp downstream
Tssr129271	transcription start site region 129271	522 bp downstream
Tssr129272	transcription start site region 129272	1694 bp downstream