rs31077101 SNP Detail

Summary

• ID
  rs31077101
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149326128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCACTAAG CAGCTTTTCT CTGCATTGAC
  AGCTCTTCCT GGGCCCCTAG TCACACAGTG ACTTCCACAT GGATGCATTT TGCCAGAAAG
  AGAAGGTTAA TCCTTGCTGT CTACAGCTAG GGTGAGTCCT GGCATCAACT GAATAGCCAA
  M
  AATCATGCCA TGACAGTAAA CATAAACTCA GAAAGTCCCA AGTTCATCAG CACAGGTTGT
  GTATTCATGT TAGGTATCAA TACGATCACT TAGAACACTG GTATTAAATA AAATAATAAT
  TCAACTACGT TGCACATTGT TCTCTACAAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49701527	NES13068110	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	C	C	A	A	A		C	A	C		C
ss320039555	CHEV_1_151297510	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31077101					SNP	A	C	A	C	C	C	A	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49701527	NES13068110	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149326128 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	411 bp upstream
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	424 bp upstream
Tssr14117	transcription start site region 14117	406 bp upstream