About   Help   FAQ
rs31077103 SNP Detail
Summary
  • ID
    rs31077103
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:149326009 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCTCCTGT TAGAGCTGAG
    GAAGCATCCC AGAAGTGATT TCTCTAAGCA TCAGCTTTCT CATGTGCCTC AGTGAATTTG
    AAGACTGGCC TTCCTTGAAA GCCCTTGTTT TTGACTTGAG GATATCATCC ACATTTTTTA
    TTTTCCAGGG AGTGAAAAAT CAGCACAGCC ATCACTAAGC AGCTTTTCTC TGCATTGACA
    R
    CTCTTCCTGG GCCCCTAGTC ACACAGTGAC TTCCACATGG ATGCATTTTG CCAGAAAGAG
    AAGGTTAATC CTTGCTGTCT ACAGCTAGGG TGAGTCCTGG CATCAACTGA ATAGCCAAAA
    ATCATGCCAT GACAGTAAAC ATAAACTCAG AAAGTCCCAA GTTCATCAGC ACAGGTTGTG
    TATTCATGTT AGGTATCAAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss49701529 NES13068106 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G
SNP Consensus Information
SNP Consensus Type
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs31077103 SNP G G G G G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49701529 NES13068106 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149326009 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm29398 predicted gene 29398 292 bp upstream
Rr30991 regulatory region 30991 within coordinates
Tssr14116 transcription start site region 14116 305 bp upstream
Tssr14117 transcription start site region 14117 287 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory