GAGCTCCTGT TAGAGCTGAG GAAGCATCCC AGAAGTGATT TCTCTAAGCA TCAGCTTTCT CATGTGCCTC AGTGAATTTG AAGACTGGCC TTCCTTGAAA GCCCTTGTTT TTGACTTGAG GATATCATCC ACATTTTTTA TTTTCCAGGG AGTGAAAAAT CAGCACAGCC ATCACTAAGC AGCTTTTCTC TGCATTGACA R CTCTTCCTGG GCCCCTAGTC ACACAGTGAC TTCCACATGG ATGCATTTTG CCAGAAAGAG AAGGTTAATC CTTGCTGTCT ACAGCTAGGG TGAGTCCTGG CATCAACTGA ATAGCCAAAA ATCATGCCAT GACAGTAAAC ATAAACTCAG AAAGTCCCAA GTTCATCAGC ACAGGTTGTG TATTCATGTT AGGTATCAAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49701529 | NES13068106 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | A | G |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
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rs31077103 | SNP | G | G | G | G | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49701529 | NES13068106 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr1:149326009 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm29398 | predicted gene 29398 | 292 bp upstream | ||||||
Rr30991 | regulatory region 30991 | within coordinates | ||||||
Tssr14116 | transcription start site region 14116 | 305 bp upstream | ||||||
Tssr14117 | transcription start site region 14117 | 287 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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