rs31077395 SNP Detail

Summary

• ID
  rs31077395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185869846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCATTG GAGGGTAGTG
  AACAACTCAC AGGGCTTCAT TCTTTCCTTC CACCACCTGG GTCATCTGGC TCAGCAACAA
  TTGCCCCTCC CCACTGATTC TTAATCCCAG CAGGAAAAAA AGTGATTCTT ATTAATAATA
  CTAATATATT TATACACTGT TTATCATTTG TAAACCTCTT AGATATCTTT TAAAACATCG
  Y
  GAGTAAACTT CGCATAGTTC TAGGCTATAG TCCTAAAATT GGTTTAGGAA AATTAAGCAA
  TTAATTTAAA TCCATGGTGG CCAGCTTGTG GACTCAAGTT TAAGCTTTCT GTCCTACATC
  ACTTGCTTTA TAAATAATGA AAAGGGGGAA GTATTGGTGG GTACATACTA ATTGTATCTC
  AGTCTTCAGT GGTGTGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss44993313	mCV24949030	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146452403	ENSMUSSNP2682384	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320182232	CHEV_1_187961528	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31077395					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185869846 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	313 bp distal
Rr425454	regulatory region 425454	195 bp proximal
Tssr10623	transcription start site region 10623	290 bp upstream