rs31077516 SNP Detail

Summary

• ID
  rs31077516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7631470 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GGATTCCGGA AGCAAAGAAT TCAGGCTGAG GGTGGGAGGG AGGAAGGAGT GGTGATCAGT
  GACTGCCGGG AGCTCTAAAT ACCCTCCCTT CCCCAGACAC TGAAGCGAAG CGGGCTCATA
  TCCAGAAGGG CACTGCCTAG ACCAAGTCCC AAATCTTTTG CCTCCCCCTA CCCTATACTG
  CTTCCTACCC ACAGGCCCTT GAAGGGTCGG AACAATAGAA AGGCCGGGAC CCCAACTCCC
  TCGCTTGAAC CATCACAACA ACCAGGGATG GGGGGGGGGG GCGACACAAG AGGACTTTGA
  R
  AATAACAATT CACTTTGAAT AAGGATTCCC GGCTGCTTTG CATTCAGAGT TCTCCCAGCC
  CCCACACCCC CTACTGTTTT GCCCATAGCT GAAAGTGAAC CCATGTCCGT ACACATGCAC
  ACAACAGAGG TACCCATCAG CCCAACACTC CATTGTAACA CCAACTGAAT GCATCACAAA
  GAGACCTGGG CTTCCAGGTT CACTTTGCAT T                               
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46478751	mCV24700003	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31077516					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7631470 () rs orientation: reverse

Symbol	Name	Function Class
Rr394688	regulatory region 394688	within coordinates
Rr689656	regulatory region 689656	1134 bp distal
Rr689657	regulatory region 689657	823 bp distal
Tfe3	transcription factor E3	within coordinates
Tssr160430	transcription start site region 160430	1266 bp downstream
Tssr160431	transcription start site region 160431	968 bp downstream
Tssr160432	transcription start site region 160432	944 bp downstream
Tssr160433	transcription start site region 160433	910 bp downstream
Tssr160434	transcription start site region 160434	880 bp downstream
Tssr160435	transcription start site region 160435	816 bp downstream
Tssr162815	transcription start site region 162815	1443 bp upstream
Tssr162816	transcription start site region 162816	566 bp downstream