rs31077826 SNP Detail

Summary

• ID
  rs31077826
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149325870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATAAAAAG GATGATTTTC CCCCTGTAGT
  GCACTGGCAT GTGACCAGCT TTGTTGAGTA TGGCTGCCAG GTTAACACTG GCAGTGGGTG
  AGCTCCTGTT AGAGCTGAGG AAGCATCCCA GAAGTGATTT CTCTAAGCAT CAGCTTTCTC
  W
  TGTGCCTCAG TGAATTTGAA GACTGGCCTT CCTTGAAAGC CCTTGTTTTT GACTTGAGGA
  TATCATCCAC ATTTTTTATT TTCCAGGGAG TGAAAAATCA GCACAGCCAT CACTAAGCAG
  CTTTTCTCTG CATTGACAGC TCTTCCTGGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49701532	NES13068100	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A	A	A		T	A	T		A
ss320039553	CHEV_1_151297252	CHEVERUD	SCREENING_POP	f	SNP										A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31077826					SNP	A	A	A	T	A	T	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49701532	NES13068100	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149325870 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	153 bp upstream
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	166 bp upstream
Tssr14117	transcription start site region 14117	148 bp upstream