rs31077830 SNP Detail

Summary

• ID
  rs31077830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149325244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCAAAT TTGGAAGTAT
  AAAAGGAATG AAAAAAATTA AAATTCCACT TTGGAAATGC AGTACAAGTT GCTGAAATTA
  TGATTCAGTG ACAGAAATAA ATGCATCCAA AACTGTGTGA GTATAATTAT GTACCACAGG
  TAGTAAATGT CATCTTATGT TTCAGTGATT TTATGGATAT CAAACTCATC TGTATGCTAT
  Y
  TCTAATAGCA GTTTTATGAC CAAACTAATA AATATAGGAA ACTGTTCTGA TTTTAATAAT
  ACATGGTTTC TTATGGTGGT AGTTTATTTT GGCTAATGTA AAATGATAAA TCTGAAGGCT
  AAGGTTAAAG TCTTGAAAAT AATTTAAAAT ACAGAATGAA ATCCTTGTCC TAGATCTTCC
  TAAAGTCATT ATTGCATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss49701536	NES13068092	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs31077830					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49701536	NES13068092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149325244 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	within coordinates
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	446 bp downstream
Tssr14117	transcription start site region 14117	467 bp downstream