rs31077831 SNP Detail

Summary

• ID
  rs31077831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149324908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA AAAGATTAAT ACATTTGCAG
  Y
  TAACCCCTAT CAATTGTTTG ATCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45017127	mCV23102930	ABI	CRAMUS_MOUSE	f	SNP	C	T				C		C
ss49701537	NES13068090	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	T		T	C	C	C		T	C	T		T
ss145694606	ENSMUSSNP6400295	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320039548	CHEV_1_151296290	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31077831					SNP	C	T	C	T	T	C	T	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49701537	NES13068090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149324908 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	within coordinates
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	782 bp downstream
Tssr14117	transcription start site region 14117	803 bp downstream