rs31078235 SNP Detail

Summary

• ID
  rs31078235
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47236203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG TGGTGGTGTG TGTGTGTGTG
  K
  GGGGGGGGTT GAACAGGTTC TTTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss46478663	mCV25349708	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss134165124	ENSMUSSNP1751078	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325889013	CHEV_X_45500503	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31078235					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47236203 () rs orientation: forward

Symbol	Name	Function Class
Rr690989	regulatory region 690989	880 bp distal
Rr690990	regulatory region 690990	within coordinates
Sash3	SAM and SH3 domain containing 3	within coordinates
Tssr160884	transcription start site region 160884	844 bp downstream
Tssr160885	transcription start site region 160885	791 bp downstream
Tssr160886	transcription start site region 160886	766 bp downstream
Tssr163272	transcription start site region 163272	580 bp downstream