rs31078675 SNP Detail

Summary

• ID
  rs31078675
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149324364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGCTGG GGCAGCACAT CAGTGAGTAA AGGAGACTGC
  TACACAAACA AGACGATTTG TGTTTCATTA CTTGGCAATC AAATACAAAT CTGGGTTTGG
  W
  TTTATGAGTC CTTAACCTGA CAGCTGGATC TTGGCTATGG TTTAGTGACA ATATGGTTAT
  GCAGGCGTGT GGGCTGGCTG ACTGCATTTT CAACTTCACA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49701541	NES13068222	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31078675					SNP	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49701541	NES13068222	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149324364 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	within coordinates
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	1326 bp downstream
Tssr14117	transcription start site region 14117	1347 bp downstream