rs31078789 SNP Detail

Summary

• ID
  rs31078789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192923633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG ACTATAAGGG GGACACAGAA
  Y
  ACTCACCTTC TGGAGACCTT CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss44993337	mCV27576412	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146525864	ENSMUSSNP6509320	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31078789					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192923633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1600010F14Rik	RIKEN cDNA 1600010F14 gene			within coordinates
D1Mit512	DNA Segment, Chr 1 Massachusetts Institute of Technology 512			24 bp distal
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr372662	regulatory region 372662			1231 bp upstream
Rr426486	regulatory region 426486			916 bp proximal
Rr426487	regulatory region 426487			1294 bp proximal
Tssr15848	transcription start site region 15848			182 bp downstream
Tssr15849	transcription start site region 15849			1021 bp downstream
Tssr15850	transcription start site region 15850			1101 bp downstream