rs31079098 SNP Detail

Summary

• ID
  rs31079098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10665140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGAGAT CTTGATGAAA
  TTCGATGACC CAAAAGAGAA ACTTACAAGA TGGAAGTCCC CCCTCAAAAA TAAATAAATA
  AATAAATAAA TAAAATTGCA ACTCTGTTGA CTGATTAGAA CTTCTTGATT GTGGAAAGCT
  GGGATGTTAC AGGGTCCAAT TAACTGATAA TTATTGTTAT TCTCCTTAAT AAATGTTGCT
  Y
  ACTTCTGTGC CTTACCTCAT ATCAATGTGA TTATCGGGTA AACCTTTTGG GATGCACTAA
  CTCAGCAGAC CCCAAAGCTA AAATGTAATC AAATAGCACC TCAGACCCAA ACAGAGATTT
  TCCCTAATTT CTCATTACCC ACTGGCCTGA TGGTCCCAGC AATGTATTTG TAAAATGCCT
  TGGGGTAGCC TTATTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44993718	mCV24892401	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss146044655	ENSMUSSNP3781661	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31079098					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10665140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10618	CpG island 10618	618 bp proximal
Tssr155086	transcription start site region 155086	948 bp upstream
Tssr155087	transcription start site region 155087	968 bp upstream
Tssr155088	transcription start site region 155088	1142 bp upstream
Tssr155089	transcription start site region 155089	1452 bp upstream
Tssr155090	transcription start site region 155090	1480 bp upstream
Vps37c	vacuolar protein sorting 37C	959 bp upstream